Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11686328 chr2:233145683 G/A 3.88E-5 176 25.87 22.63 9.13 KM Plot
PCPG rs116881803 chr10:69738319 G/T 0 177 25.87 18.2 2.28 KM Plot
PCPG rs11688688 chr2:122037415 A/G 0.000449 171 25.97 19.2 24.1 KM Plot
PCPG rs11688732 chr2:239096622 G/T 3.1E-5 171 29.43 18.2 13.22 KM Plot
PCPG rs11690298 chr2:176152165 T/C 0.000128 176 6.62 28.95 25.28 KM Plot
PCPG rs116934693 chr12:56696545 T/G 1.04E-7 177 25.53 27.33 0.8 KM Plot
PCPG rs11695300 chr2:107237457 G/A 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs117012037 chr10:69789194 G/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs11701226 chr21:38472454 G/A 9.44E-9 175 25.35 25.87 3.83 KM Plot
PCPG rs11701444 chr21:38467556 G/A 9.32E-9 176 25.17 25.87 3.83 KM Plot
PCPG rs11702020 chr21:38443477 T/C 4.52E-6 178 25 26.57 3.7 KM Plot
PCPG rs11702061 chr21:38439686 A/G 4.52E-6 178 25 26.57 3.7 KM Plot
PCPG rs11702610 chr21:38503870 T/G 1.11E-16 174 24.7 25.63 3.17 KM Plot
PCPG rs117028299 chr7:105162310 T/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs11706150 chr3:195758848 A/G 0.000116 170 24.62 36 10.57 KM Plot